ANDRÉ Group Publications

Scientific journals

2019

Correard S, Plassais J, Lagoutte L, Botherel N, Thibaud JL, Hédan B, Richard L, Lia AS, Delague V, Mège C, Mathis S, Guaguère E, Paradis M, Vallat JM, Quignon P, André C. Canine neuropathies: powerful spontaneous models for human hereditary sensory neuropathies. Hum Genet. 2019 Apr 6. doi: 10.1007/s00439-019-02003-x. PubMed PMID: 30955094.

Bunel M, Chaudieu G, Hamel C, Lagoutte L, Manes G, Botherel N, Brabet P, Pilorge P, André C, Quignon P. Natural models for retinitis pigmentosa: progressive retinal atrophy in dog breeds. Hum Genet. 2019 Mar 23. doi:10.1007/s00439-019-01999-6. PubMed PMID: 30904946.

2018

Segaoula Z, Primot A, Lepretre F, Hedan B, Bouchaert E, Minier K, Marescaux L, Serres F, Galiègue-Zouitina S, André C, Quesnel B, Thuru X, Tierny D. Isolation and characterization of two canine melanoma cell lines: new models for comparative oncology. BMC Cancer. 2018 Dec 4;18(1):1219. doi:10.1186/s12885-018-5114-y. PubMed PMID: 30514258; PubMed Central PMCID: PMC6280433.

Ollivier M, Tresset A, Frantz LAF, Bréhard S, Bălăşescu A, Mashkour M, Boroneanţ A, Pionnier-Capitan M, Lebrasseur O, Arbogast RM, Bartosiewicz L, Debue K, Rabinovich R, Sablin MV, Larson G, Hänni C, Hitte C, Vigne JD. Dogs accompanied humans during the Neolithic expansion into Europe. Biol Lett. 2018 Oct 17;14(10). pii: 20180286. doi: 10.1098/rsbl.2018.0286. PubMed PMID: 30333260; PubMed Central PMCID: PMC6227856.

Le Béguec C, Wucher V, Lagoutte L, Cadieu E, Botherel N, Hédan B, De Brito C, Guillory AS, André C, Derrien T, Hitte C. Characterisation and functional predictions of canine long non-coding RNAs. Sci Rep. 2018 Sep 7;8(1):13444. doi:10.1038/s41598-018-31770-2. PubMed PMID: 30194329; PubMed Central PMCID:PMC6128939.

Lorant J, Larcher T, Jaulin N, Hedan B, Lardenois A, Leroux I, Dubreil L, Ledevin M, Goubin H, Moullec S, Deschamps JY, Thorin C, André C, Adjali O, Rouger K. Vascular Delivery of Allogeneic MuStem Cells in Dystrophic Dogs Requires Only Short-Term Immunosuppression to Avoid Host Immunity and Generate Clinical/Tissue Benefits. Cell Transplant. 2018 Jul;27(7):1096-1110. doi:10.1177/0963689718776306. Epub 2018 Jun 5. PubMed PMID: 29871519; PubMed Central. PMCID: PMC6158548.

Bauer A, Jagannathan V, Högler S, Richter B, McEwan NA, Thomas A, Cadieu E, André C, Hytönen MK, Lohi H, Welle MM, Roosje P, Mellersh C, Casal ML, Leeb MKLN1 splicing defect in dogs with lethal acrodermatitis, PLoS Genet. 2018 Mar 22;14(3). PMID: 29565995

Acuña-Amador L, Primot A, Cadieu E, Roulet A, Barloy-Hubler F. Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains. BMC Genomics. 2018 Jan 16;19(1):54. doi: 10.1186/s12864-017-4429-4. PubMed PMID: 29338683; PubMed Central PMCID: PMC5771137.

2017

Broeckx B, Derrien T, Mottier S, Wucher V, Cadieu E, Hedan B, Le Beguec C, Botherel N, Lindblad-Toh K, Saunders J.H, Deforce D, Andre C, Peelman L, Hitte C. An exome sequencing based approach for genome-wide association studies in the dog, Scientific Reports, 2017. PMID: 29142306

Ulve R*, Rault M*, Bahin M, Lagoutte L, Abadie J, De Brito C, Coindre JM, Botherel N, Rousseau A, Wucher V, Cadieu E, Thieblemont C, Hitte C, Cornevin L, Cabillic F, Bachelot L, Gilot D, Hennuy B, Guillaudeux T, Le Goff A, Derrien T, Hedan B, Andre C. Discovery of human-similar gene fusions in canine cancers. Cancer Res. 2017. PMID: 28883003

Meuric V, Le Gall-David S, Boyer E, Acuña-Amador L, Martin B, Fong SB, Barloy-Hubler F, Bonnaure-Mallet M. Signature of Microbial Dysbiosis in Periodontitis. Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00462-17. doi: 10.1128/AEM.00462-17. Print 2017 Jul 15. PubMed PMID: 28476771; PubMed Central PMCID: PMC5494626.

Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, Julca I, Kettles GJ, Kowitwanich K, Lavenier D, Lenzi P, Lopez-Gomollon S, Loska D, Mapleson D, Maumus F, Moxon S, Price DR, Sugio A, van Munster M, Uzest M, Waite D, Jander G, Tagu D, Wilson AC, van Oosterhout C, Swarbreck D, Hogenhout SA. Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 2017. PMID: 28190401

Wucher V, Legeai F, Hédan B, Rizk G, Lagoutte L, Leeb T, Jagannathan V, Cadieu E, David A, Lohi H, Cirera S, Fredholm M, Botherel N, Leegwater PA, Le Béguec C, Fieten H, Johnson J, Alföldi J, André C, Lindblad-Toh K, Hitte C, Derrien T. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. Nucleic Acids Res., 2017. PMID: 28053114

Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 2017. PMID: 28073357

Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T. Bioinformatics Pipeline for Transcriptome Sequencing Analysis. Methods Mol Biol., 2017. PMID: 27662878

Koskinen LL, Seppälä EH, Weissl J, Jokinen TS, Viitmaa R, Hänninen RL, Quignon P, Fischer A, André C, Lohi H. ADAM23 is a common risk gene for canine idiopathic epilepsy. BMC Genet. 2017 Jan 31;18(1):8. doi: 10.1186/s12863-017-0478-6. PubMed  PMID: 28143391; PubMed Central PMCID: PMC5282852.

Sandrine Le Gall-David, Vincent Meuric, Gaëlle Benzoni, Sophie Valière, Alain Guyonvarch, Jacques Minet, Martine Bonnaure-Mallet, Frédérique Barloy-Hubler. Effect of Zeolite on Small Intestine Microbiota of Broiler Chickens: A Case Study. Food and Nutrition Sciences 2017. Vol.8 No.1. Sciences 2017. Vol.8 No.1.

2016

Plassais J, Lagoutte L, Correard S, Paradis M, Guaguère E, Hédan B, Pommier A, Botherel N, Cadiergues MC, Pilorge P, Silversides D, Bizot M, Samuels M, Arnan C, Johnson R, Hitte C, Salbert G, Méreau A, Quignon P, Derrien T, André. A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies. PLoS Genet. 2016. PMID: 28033318

Ollivier M, Tresset A, Bastian F, Lagoutte L, Axelsson E, Arendt M.J, Balasescu A, Marshour M, Pionnier-Capitan M, Sablin M.V, Salanova L, Vigne J.D, Hitte C, Hänni C. Amy2B copy number variation reveals starch diet adaptation in European ancient dogs. Royal Society Open Science, 2016. PMID: 28018628

Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau MM, Van De Peer Y, Hitte C, Corre E, Coelho SM, Cock JM. Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytol., 2016. PMID: 27870061

Frantz LA, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale MD, Dimopoulos EA, Tresset A, Duffraisse M, McCormick F, Bartosiewicz L, Gál E, NyergesEA, Sablin MV, Bréhard S, Mashkour M, Balllasescu A, Gillet B, Hughes S, Chassaing O, Hitte C, Vigne JD, Dobney K, Hänni C,Bradley DG, Larson G. Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science. 2016. PMID: 27257259

2015

Abitbol M, Hitte C, Bossé P, Blanchard-Gutton N, Thomas A, Martignat L, Blot S, Tiret L. A COLQ Missense Mutation in Sphynx and Devon Rex Cats with Congenital Myasthenic Syndrome. PLoS One. 2015 Sep. PMID: 26327126

Broeckx BJ, Hitte C, Coopman F, Verhoeven GE, De Keulenaer S, De Meester E, Derrien T, Alfoldi J, Lindblad-Toh K, Bosmans T, Gielen I, Van Bree H, Van Ryssen B, Saunders JH, Van Nieuwerburgh F, Deforce D. Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes. Sci Rep. 2015 Aug 3;5:12810 . PMID: 26235384

Leroy G, Phocas F, Hedan B, Verrier E, Rognon X. Inbreeding impact on litter size and survival in selected canine breeds. Vet J. 2015 Jan;203(1):74-8. PMID: 25475165

Plassais J, Guaguère E, Lagoutte L, Guillory AS, de Citres CD, Degorce-Rubiales F, Delverdier M, Vaysse A, Quignon P, Bleuart C, Hitte C, Fautrel A, Kaerle C, Bellaud P, Bensignor E, Queney G, Bourrat E, Thomas A, André C. A spontaneous KRT16 mutation in a dog breed: a model for human focal non-epidermolytic palmoplantar keratoderma (FNEPPK). J Invest Dermatol. 2015 Apr;135(4):1187-90. PMID: 25521457

2014

Chaudieu G, Olivier A, Thomas A, Bunel M, Albaric O, Lafont E, Quignon P, André C.  Atrophie progressive de la rétine du Border Collie : étude rétrospective (1996-2012). PMCAC, Revue vétérinaire clinique. 09/2014; 49(3).

Drögemüller M, Jagannathan V, Becker D, Drögemüller C, Schelling C, Plassais J, Kaerle C, Dufaure de Citres C, Thomas A, Müller EJ, Welle MM, Roosje P, T. A mutation in the FAM83G gene in dogs with hereditary footpad hyperkeratosis (HFH). PLoS Genet. 2014 May 15. PMID: 24832243

Gillard M, Cadieu E, De Brito C, Abadie J, Vergier B, Devauchelle P, Degorce F, Dréano S, Primot A, Dorso L, Lagadic M, Galibert F, Hédan B, Galibert MD, André C. Naturally occurring melanomas in dogs as models for non-UV pathways of human melanomas. Pigment Cell Melanoma Res. 2014 Jan;27(1):90-102. PMID: 24112648

2013

Ollivier M, Tresset A, Hitte C, Petit C, Hughes S, Gillet B, Duffraisse M, Pionnier-Capitan M, Lagoutte L, Arbogast RM, Balasescu A, Boroneant A, Mashkour M, Vigne JD, Hänni C. Evidence of coat color variation sheds new light on ancient canids. PLoS One. 2013 PMID: 24098367Andre C, Grall A, Guaguere E, Thomas A, Galibert F.

Andre C, Grall A, Guaguere E, Thomas A, Galibert F. Spontaneous models of human diseases in dogs: ichthyoses as an example. Bull Acad Natl Med. 2013 Jun;197(6):1225-30. French.

2012

Berglund J, Nevalainen EM, Molin AM, Perloski M, Lupa TL, Andre C, Zody MC, Sharpe T, Hitte C, Lindblad-Toh K, Lohi H, Webster MT. Novel origins of copy number variation in the dog genome. Genome Biol. 2012 Aug 23;13(8):R73. PMID: 22916802

Maurer M, Mary J, Guillaud L, Fender M, Pelé M, Bilzer T, Olby N, Penderis J, Shelton GD, Panthier JJ, Thibaud JL, Barthélémy I, Aubin-Houzelstein G, Blot S, Hitte C, Tiret L. Centronuclear myopathy in Labrador retrievers: a recent founder mutation in the PTPLA gene has rapidly disseminated worldwide. PLoS One. 2012;7(10). PMID: 23071563

Guyon R, Rakotomanga M, Azzouzi N, Coutanceau JP, Bonillo C, D’Cotta H, Pepey E, Soler L, Rodier-Goud M, D’Hont A, Conte MA, van Bers NE, Penman DJ, Hitte C, Crooijmans RP, Kocher TD, Ozouf-Costaz C, Baroiller JF, Galibert F. A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs. BMC Genomics. 2012 Jun 6;13(1):222. PMID: 22672252

Shearin AL, Hedan B, Cadieu E, Erich SA, Schmidt EV, Faden DL, Cullen J, Abadie J, Kwon EM, Gröne A, Devauchelle P, Rimbault M, Karyadi DM, Lynch M, Galibert F, Breen M, Rutteman GR, André C, Parker HG, Ostrander EA. The MTAP-CDKN2A Locus Confers Susceptibility to a Naturally Occurring Canine Cancer. Cancer Epidemiol Biomarkers Prev. 2012 May 31. PMID: 22623710

Grall A, Guaguère E, Planchais S, Grond S, Bourrat E, Hausser I, Hitte C, Le Gallo M, Derbois C, Kim GJ, Lagoutte L, Degorce-Rubiales F, Radner FPW, Thomas A, Kury S, Bensignor E, Fontaine J, Pin D, Zimmermann R, Zech-ner R, Lathrop MGM, Galibert F, André C, Fischer J. PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans. Nature Genetics 2012 Jan 15;44(2):140-7. PMID: 22246504

Derrien T, Vaysse A, André C, Hitte C. Annotation of the domestic dog genome sequence: finding the missing genes. Mamm Genome. 2012 Feb;23(1-2):124-31. PMID: 22076420

Quignon P, Rimbault M, Robin S, Galibert F. Genetics of canine olfaction and receptor diversity. Mamm Genome. 2012 Feb;23(1-2):132-43. PMID: 2208030

2011

Derrien T, Vaysse A, André C, Hitte C. Annotation of the domestic dog genome sequence: finding the missing genes. Mamm Genome. 2012 Feb;23(1-2):124-31. doi: 10.1007/s00335-011-9372-0. Epub 2011 Nov 11.

Galibert F, Quignon P, Hitte C, André C. Toward understanding dog evolutionary and domestication history. C R Biol. 2011 Mar;334(3):190-6. doi: 10.1016/j.crvi.2010.12.011. Epub 2011 Feb 1.

Hédan B, Thomas R, Motsinger-Reif A, Abadie J, André C, Cullen J and Breen M. Molecular cytogenetic characterization of canine histiocytic sarcoma: A spontaneous model for human histiocytic cancer identifies deletion of tumor suppressor genes and highlights influence of genetic background on tumor behavior. BMC Cancer. 2011, May, 11. 201.

Lequarré AS, Andersson L, André C, Fredholm M, Hitte C, Leeb T, Lohi H, Lindblad-Toh K, Georges M. LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs. Vet J. 2011 Aug;189(2):155-9.

Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G, Sigurdsson S, Fall T, Seppälä EH, Hansen MS, Lawley CT, Karlsson EK; The LUPA Consortium, Bannasch D, Vilà C, Lohi H, Galibert F, Fredholm M, Häggström J, Hedhammar A, André C, Lindblad-Toh K, Hitte C, Webster MT. Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping. PLoS Genet. 2011 Oct;7(10):e1002316.

2010

Abitbol M, Thibaud JL, Olby NJ, Hitte C, Puech JP, Maurer M, Pilot Storck F, Hédan B, Dréano S, Brahimi S, Delattre D, André C, Gray F, Delisle F, Caillaud C, Bernex F, Panthier JJ, Aubin- Houzelstein G, Blot S & Tiret L. A canine ARSG mutation leading to a sulfatase deficiency is associated with neuronal ceroid lipofuscinosis, PNAS, 2010, Aug 17;107(33):14775-80.

Beggs AH, Böhm J, Snead E, Kozlowski M, Maurer M, Minor K, Childers MK, Taylor SM, Hitte C, Mickelson JR, Guo LT, Mizisin AP, Buj-Bello A, Tiret L, Laporte J, Shelton GD. MTM1 mutation associated with X-linked myotubular myopathy in Labrador Retrievers. Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14697-702. doi: 10.1073/pnas.1003677107. Epub 2010 Aug 3.

Patent

André et al. 17 November 2009; Ref 03116-01 ANDRE et al. (Ref : VD/ACV BET 09P1294) European patent N°10779011.5 accepted and US patent ongoing for CNRS and University of Rennes 1: Method for diagnosing skin disease – ichthyosis in dogs.

Books

André C and Plassais J. Dogs in comparative pathology and genetics : examples of diseaes and genes shared between humans and dogs. Bull. Acad. Vet. France — 2012 - Tome 165 - N°3 : 215-224.

Cadieu E*, De Brito C*, Gillard M, Abadie J, Vergier B, Guillory AG, Devauchelle P, Degorce F, Lagoutte L, Hédan B, Galibert F, Galibert MD, and André C. Analyses comparées des mélanomes chez le chien et l’Homme. Bull. Acad. Vet. France — 2014

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