ANDRÉ Group Publications

Scientific journals

2017

Wucher V, Legeai F, Hédan B, Rizk G, Lagoutte L, Leeb T, Jagannathan V, Cadieu E, David A, Lohi H, Cirera S, Fredholm M, Botherel N, Leegwater PA, Le Béguec C, Fieten H, Johnson J, Alföldi J, André C, Lindblad-Toh K, Hitte C, Derrien T. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. Nucleic Acids Res., 2017 Jan 3.

Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 2017 Jan 10;49(1):6.

Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T. Bioinformatics Pipeline for Transcriptome Sequencing Analysis. Methods Mol Biol., 2017;1468:201-19.

2016

Plassais J, Lagoutte L, Correard S, Paradis M, Guaguère E, Hédan B, Pommier A, Botherel N, Cadiergues MC, Pilorge P, Silversides D, Bizot M, Samuels M, Arnan C, Johnson R, Hitte C, Salbert G, Méreau A, Quignon P, Derrien T, André. A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies. PLoS Genet. 2016 Dec 29;12(12):e1006482.

Ollivier M, Tresset A, Bastian F, Lagoutte L, Axelsson E, Arendt M.J, Balasescu A, Marshour M, Pionnier-Capitan M, Sablin M.V, Salanova L, Vigne J.D, Hitte C, Hänni C. Amy2B copy number variation reveals starch diet adaptation in European ancient dogs. Royal Society Open Science, 2016 Nov 9;3(11):160449.

Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau MM, Van De Peer Y, Hitte C, Corre E, Coelho SM, Cock JM. Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytol., 2016 Nov 21.

Frantz LA, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale MD, Dimopoulos EA, Tresset A, Duffraisse M, McCormick F, Bartosiewicz L, Gál E, Nyerges ÉA, Sablin MV, Bréhard S, Mashkour M, Bălăşescu A, Gillet B, Hughes S, Chassaing O, Hitte C, Vigne JD, Dobney K, Hänni C, Bradley DG, Larson G. Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science. 2016 Jun 3;352(6290):1228-31.

2015

Abitbol M, Hitte C, Bossé P, Blanchard-Gutton N, Thomas A, Martignat L, Blot S, Tiret L. A COLQ Missense Mutation in Sphynx and Devon Rex cats with Congenital Myasthenic Syndrome. PLos One, 2015 Sep 1;10(9).

Broeckx B.J.G, Hitte C, Coopman F, Verhoeven G.E.C, De Keulenaer S, De Meester E, Derrien T, Alfoldi J, Lindblad-Toh K, Bosmans T, Gielen I, Van Bree H, Van Ryssen B, H. Saunders J, Van Nieuwerburgh F, Deforce D. Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes. Sci Rep. 2015 Aug 3;5:12810.

Plassais J, Guaguère E, Lagoutte L, Guillory AG, Dufaure de Citres C, Degorce-Rubiales F, Delverdier M, Vaysse A, Quignon P, Bleuart C, Hitte C, Fautrel A, Kaerle C, Bellaud P, Bensignor E, Queney G, Bourrat E, Thomas A* and André C*. A spontaneous KRT16 mutation in a dog breed: a model for human Focal Non Epidermolytic Palmoplantar Keratoderma (FNEPPK). J Invest Dermatol. 2015 Apr;135(4):1187-90.

2014

Chaudieu G, Olivier A, Thomas A, Bunel M, Albaric O, Lafont E, Quignon P, André C. Atrophie progressive de la rétine du Border Collie : étude rétrospective (1996-2012). PMCAC, Revue vétérinaire clinique. 09/2014; 49(3).

Gillard M, Cadieu E, De Brito C, Abadie J, Vergier B, Devauchelle P, Degorce F, Dreano S, Primot A, Dorso L, Lagadic M, Galibert F, Hédan B, Galibert MD, and André C. Naturally occurring melanomas in dogs as relevant models for human melanomas. Pigment Cell & Melanoma Research 2014, 2014 Jan;27(1):90-102.

2013

Ollivier M, Tresset A, Hitte C, Petit C, Hughes S, Gillet B, Duffraisse M, Pionnier-Capitan M, Lagoutte L, Arbogast RM, Balasescu A, Boroneant A, Mashkour M, Vigne JD, Hänni C. Evidence of coat color variation sheds new light on ancient canids. PLoS One. 2013 Oct 2;8(10).

Steijger T, J.F. Abril, P.G. Engström, F. Kokocinski, J.F. Abril, M. Akerman, T. Alioto, G. Ambrosini, S.E. Antonarakis, J. Behr, P. Bertone, R. Bohnert, P. Bucher, N. Cloonan, T. Derrien, S. Djebali, J. Du, S. Dudoit, P.G. Engström, M. Gerstein, T.R. Gingeras, D. Gonzalez, S.M. Grimmond, R. Guigo, L. Habegger, J. Harrow, T.J. Hubbard, C. Iseli, G.
Jean, A. Kahles, F. Kokocinski, J. Lagarde, J. Leng, G. Lefebvre, S. Lewis, A. Mortazavi, P. Niermann, G. Rätsch, A. Reymond, P. Ribeca, H. Richard, J. Rougemont, J. Rozowsky, M. Sammeth, A. Sboner, M.H. Schulz, S.M.J. Searle, N.D. Solorzano, V. Solovyev, M. Stanke, T. Steijger, B.J. Stevenson, H. Stockinger, A. Valsesia, D. Weese, S. White,
B.J. Wold, J. Wu, T.D. Wu, G. Zeller, D. Zerbino, M.Q. Zhang, T.J. Hubbard, R. Guigo, J. Harrow, P. Bertone, Assessment of transcript reconstruction methods for RNA-seq. Nat Methods 2013 Dec;10(12):1177-84.

2012

Berglund J, Nevalainen EM, Molin AM, Perloski M; LUPA Consortium, André C, Zody MC, Sharpe T, Hitte C, Lindblad-Toh K, Lohi H, Webster MT. Novel origins of copy number variation in the dog genome. Genome Biol. 2012 Aug23;13(8).

Grall A, Guaguère E, Planchais S, Grond S, Bourrat E, Hausser I, Hitte C, Le Gallo M, Derbois C, Kim GJ, Lagoutte L, Degorce-Rubiales F, Radner FPW, Thomas A, Küry S, Bensignor E, Fontaine J, Pin D, Zimmermann R, Zechner R, Lathrop M, Galibert F, André C & Fischer J. A PNPLA1mutations cause autosomal recessive congenital ichthyosis in
Golden retriever dogs and humans. Nat Genet. 2012 Jan 15;44(2):140-7.

Maurer M, Mary J, Guillaud L, Fender M, Pelé M, Bilzer T, Olby N, Penderis J, Shelton GD, Panthier JJ, Thibaud JL, Barthélémy I, Aubin-Houzelstein G, Blot S, Hitte C, Tiret L. Centronuclear myopathy in Labrador retrievers: a recent founder mutation in the PTPLA gene has rapidly disseminated worldwide. PLoS One. 2012;7(10): Oct 5. (IF : 3,53)
Quignon P, Rimbault M, Robin S, Galibert F. Genetics of canine olfaction and receptor diversity. Mamm Genome. 2012 Feb;23(1-2):132-43.

Shearin AL*, Hedan B*, Cadieu E, Erich SA, Schmidt EV, Faden DL, Cullen J, Abadie J, Kwon EM, Gröne A, Devauchelle P, Rimbault M, Karyadi DM, Lynch M, Galibert F, Breen M, Rutteman GR, André C, Parker HG, Ostrander EA. The MTAP-CDKN2A Locus Confers Susceptibility to a Naturally Occurring Canine Cancer. Cancer Epidemiol Biomarkers Prev.
2012 Jul;21(7):1019-27.

2011

Derrien T, Vaysse A, André C, Hitte C. Annotation of the domestic dog genome sequence: finding the missing genes. Mamm Genome. 2012 Feb;23(1-2):124-31. doi: 10.1007/s00335-011-9372-0. Epub 2011 Nov 11.

Galibert F, Quignon P, Hitte C, André C. Toward understanding dog evolutionary and domestication history. C R Biol. 2011 Mar;334(3):190-6. doi: 10.1016/j.crvi.2010.12.011. Epub 2011 Feb 1.

Hédan B, Thomas R, Motsinger-Reif A, Abadie J, André C, Cullen J and Breen M. Molecular cytogenetic characterization of canine histiocytic sarcoma: A spontaneous model for human histiocytic cancer identifies deletion of tumor suppressor genes and highlights influence of genetic background on tumor behavior. BMC Cancer. 2011, May,
11. 201.

Lequarré AS, Andersson L, André C, Fredholm M, Hitte C, Leeb T, Lohi H, Lindblad-Toh K, Georges M. LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs. Vet J. 2011 Aug;189(2):155-9.

Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G, Sigurdsson S, Fall T, Seppälä EH, Hansen MS, Lawley CT, Karlsson EK; The LUPA Consortium, Bannasch D, Vilà C, Lohi H, Galibert F, Fredholm M, Häggström J, Hedhammar A, André C, Lindblad-Toh K, Hitte C, Webster MT. Identification of Genomic Regions Associated with
Phenotypic Variation between Dog Breeds using Selection Mapping. PLoS Genet. 2011 Oct;7(10):e1002316.

2010

Abitbol M, Thibaud JL, Olby NJ, Hitte C, Puech JP, Maurer M, Pilot Storck F, Hédan B, Dréano S, Brahimi S, Delattre D, André C, Gray F, Delisle F, Caillaud C, Bernex F, Panthier JJ, Aubin- Houzelstein G, Blot S & Tiret L. A canine ARSG mutation leading to a sulfatase deficiency is associated with neuronal ceroid lipofuscinosis, PNAS, 2010, Aug
17;107(33):14775-80.

Beggs AH, Böhm J, Snead E, Kozlowski M, Maurer M, Minor K, Childers MK, Taylor SM, Hitte C, Mickelson JR, Guo LT, Mizisin AP, Buj-Bello A, Tiret L, Laporte J, Shelton GD. MTM1 mutation associated with X-linked myotubular myopathy in Labrador Retrievers. Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14697-702. doi: 10.1073/pnas.1003677107. Epub
2010 Aug 3.

Patent

André et al. 17 November 2009; Ref 03116-01 ANDRE et al. (Ref : VD/ACV BET 09P1294) European patent N°10779011.5 accepted and US patent ongoing for CNRS and University of Rennes 1: Method for diagnosing skin disease – ichthyosis in dogs.

Books

André C and Plassais J. Dogs in comparative pathology and genetics : examples of diseaes and genes shared between humans and dogs. Bull. Acad. Vet. France — 2012 - Tome 165 - N°3 : 215-224.

Cadieu E*, De Brito C*, Gillard M, Abadie J, Vergier B, Guillory AG, Devauchelle P, Degorce F, Lagoutte L, Hédan B, Galibert F, Galibert MD, and André C. Analyses comparées des mélanomes chez le chien et l’Homme. Bull. Acad. Vet. France — 2014

 

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