Gene Expression and Development Group Publications

Publications, 2010-2017

> 2017

United we stand: big roles for small RNA gene clusters
Brice Felden, Luc Paillard
RNA 2017 Feb

 

> 2016

Robust identification of Ptbp1-dependent splicing events by a junction-centric approach in Xenopus laevis
Maud Noiret, Agnès Méreau, Gaëlle Angrand, Marion Bervas, Carole Gautier-Courteille, Vincent Legagneux, Stéphane Deschamps, Hubert Lerivray, Justine Viet, Serge Hardy, Luc Paillard, Yann Audic
Dev Biol 2016 Aug
Link to R scripts and data

Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells.
Le Tonquèze O, Gschloessl B, Legagneux V, Paillard L, Audic Y.
Genom Data. 2016 Apr

Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways.
Noiret M, Mottier S, Angrand G, Gautier-Courteille C, Lerivray H, Viet J, Paillard L, Mereau A, Hardy S, Audic Y.
Dev Biol. 2016 Jan.

 

>2015

Hypogonadism Associated with Cyp19a1 (Aromatase) Posttranscriptional Upregulation in Celf1 Knockout Mice.
Boulanger G, Cibois M, Viet J, Fostier A, Deschamps S, Pastezeur S, Massart C, Gschloessl B, Gautier-Courteille C, Paillard L.
Mol Cell Biol. 2015 Sep.

A post-transcriptional mechanism that controls Ptbp1 abundance in Xenopus epidermis. 
Méreau A, Anquetil V, Lerivray H, Viet J, Schirmer C, Audic Y, Legagneux V, Hardy S, Paillard L.
Mol Cell Biol. 2015 Feb.

90 Focus on a clear message: conserved RNA binding proteins function in mRNA control in eye lens development and their deficiency causes cataract.
Siddam AD, Gautier-Courteille C, Kakrana A, Legagneux V, Dang CA, Perez-Campos L, Méreau A, Scheiblin D, Viet J, Beebe DC, Gross JM, Paillard L, Lachke SA.
J Biomol Struct Dyn. 2015

 

> 2014

Dynamic estrogen receptor interactomes control estrogen-responsive trefoil Factor (TFF) locus cell-specific activities.
Quintin J, Le Péron C, Palierne G, Bizot M, Cunha S, Sérandour AA, Avner S, Henry C, Percevault F, Belaud-Rotureau MA, Huet S, Watrin E, Eeckhoute J, Legagneux V, Salbert G, Métivier R. 
Mol Cell Biol. 2014 Jul.

Evaluating the effects of CELF1 deficiency in a mouse model of RNA toxicity.
Kim YK, Mandal M, Yadava RS, Paillard L, Mahadevan MS.
Hum Mol Genet. 2014 Jan

zfp36 expression delineates both myeloid cells and cells localized to the fusing neural folds in Xenopus tropicalis.
Noiret M, Hardy S, Audic Y.
Int J Dev Biol. 2014.

 

> 2013

A gene regulation network controlled by Celf1 protein-rbpj mRNA interaction in Xenopus somite segmentation.
Cibois M, Gautier-Courteille C, Kodjabachian L, Paillard L.
Biol Open. 2013 Aug

Implication of the SMN complex in the biogenesis and steady state level of the signal recognition particle.
Piazzon N, Schlotter F, Lefebvre S, Dodré M, Méreau A, Soret J, Besse A, Barkats M, Bordonné R, Branlant C, Massenet S.
Nucleic Acids Res. 2013 Jan

 

> 2012

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. 
Saulière J, Murigneux V, Wang Z, Marquenet E, Barbosa I, Le Tonquèze O, Audic Y, Paillard L, Roest Crollius H, Le Hir H.
Nat Struct Mol Biol. 2012 Nov

Inactivation of the Celf1 gene that encodes an RNA-binding protein delays the first wave of spermatogenesis in mice.
Cibois M, Boulanger G, Audic Y, Paillard L, Gautier-Courteille C.
PLoS One. 2012.

Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis.
Noiret M, Audic Y, Hardy S.
Int J Dev Biol. 2012.

Investigating alternative RNA splicing in Xenopus.
Mereau A, Hardy S.
Methods Mol Biol. 2012.

Involvement of ITIH5, a candidate gene for congenital uterovaginal aplasia (Mayer-Rokitansky-Küster-Hauser syndrome), in female
genital tract development. 

Morcel K, Watrin T, Jaffre F, Deschamps S, Omilli F, Pellerin I, Levêque J and Guerrier D.
Gene Expr. 2012.

 

> 2011

ZFPIP/Zfp462 is involved in P19 cell pluripotency and in their neuronal fate.
Massé J, Piquet-Pellorce C, Viet J, Guerrier D, Pellerin I, Deschamps S.
Exp Cell Res. 2011 Aug

> 2010

Reverse genetics in eukaryotes.
Hardy S, Legagneux V, Audic Y, Paillard L.
Biol Cell. 2010 Oct.

Post-transcriptional controls - adding a new layer of regulation to clock gene expression.
Cibois M, Gautier-Courteille C, Legagneux V, Paillard L.
Trends Cell Biol. 2010 Sep.

Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum.
Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S.
BMC Genomics. 2010 May.

Chromosome wide analysis of CUGBP1 binding sites identifies the tetraspanin CD9 mRNA as a target for CUGBP1-mediated down-regulation.
Le Tonquèze O, Gschloessl B, Namanda-Vanderbeken A, Legagneux V, Paillard L, Audic Y.
Biochem Biophys Res Commun. 2010 Apr.

Involvement of ZFPIP/Zfp462 in chromatin integrity and survival of P19 pluripotent cells.
Massé J, Laurent A, Nicol B, Guerrier D, Pellerin I, Deschamps S.
Exp Cell Res. 2010 Apr.

ERK-regulated differential expression of the Mitf 6a/b splicing isoforms in melanoma. 
Primot A, Mogha A, Corre S, Roberts K, Debbache J, Adamski H, Dreno B, Khammari A, Lesimple T, Mereau A, Goding CR, Galibert MD.
Pigment Cell Melanoma Res. 2010 Feb.

A strategy to analyze the phenotypic consequences of inhibiting the association of an RNA-binding protein with a specific RNA.
Cibois M, Gautier-Courteille C, Vallée A, Paillard L.
RNA. 2010 Jan.

 

Book chapters

Study of RNA-protein interactions and RNA structure in ribonucleoprotein particles (RNP).
Marchand V, Mougin A, Mereau A, Behm-Ansmant I, Motori y , Branlant C.
In : Hartmann RK, Bindereif A, Schön A, Westhof E, Eds., 2014, Hand(44) Handbook on RNA biochemistry: second, completely revised and enlarged edition

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