Publications

2010-2015

> 2015

Mechanism of eIF6 release from the nascent 60S ribosomal subunit.
Weis F, Giudice E, Churcher M, Jin L, Hilcenko C, Wong CC, Traynor D, Kay RR, Warren AJ.
Nat. Struct. Mol. Biol. 2015 Nov.

Hsp90 oligomerization process: How can p23 drive the chaperone machineries?
Lepvrier E, Nigen M, Moullintraffort L, Chat S, Allegro D, Barbier P, Thomas D, Nazabal A, Garnier C.
Biochim Biophys Acta. 2015 Oct

Hsp90 Oligomers Interact with the Aha1 Co-Chaperone: A new Outlook for the Hsp90 Chaperone Machineries.
Lepvrier E, Moullintraffort L, Nigen M, Goude R, Allegro D, Barbier P, Peyrot V, Thomas D, Nazabal A, Garnier C.
Anal Chem. 2015 Jul.

Quality control in protein synthesis. 
Gillet R.
Biochimie. 2015 Jul
>> Journal cover

La synthèse des protéines par le ribosome : un chemin semé d’embûches [Protein synthesis by the ribosome: a pathway full of pitfalls].
Macé K, Giudice E, Gillet R.
Med Sci (Paris). 2015 Mar.

Diffusion and partitioning of macromolecules in casein microgels: evidence for size-dependent attractive interactions in a dense protein system.
De Sa Peixoto P, Bouchoux A, Huet S, Madec MN, Thomas D, Floury J,  Gesan-Guiziou G.
Langmuir. 2015 Feb

Recrystallized S Layer protein of a probiotic propionibacterium: structural and nanomechanical changes upon temperature or pH shifts probed by solid-state NMR and AFM.
De Sa Peixoto P, Roiland C, Thomas D, Briard-Bion V, Le Guellec R, Parayre S, Deutsch SM, Jan G, Guyomarc’h F.
Langmuir. 2015 Jan

> 2014

Optimized Protocol for Protein Macrocomplexes Stabilization Using the EDC, 1-Ethyl-3-(3-(dimethylamino)propyl)carbodiimide, Zero-Length Cross-Linker. 
Lepvrier E, Doigneaux C, Moullintraffort L, Nazabal A, Garnier C.
Anal Chem. 2014 Nov.

Overexpression of MLN51 triggers P-body disassembly and formation of a new type of RNA granules.
Cougot N, Daguenet E, Baguet A, Cavalier A, Thomas D, Bellaud P, Fautrel A, Godey F, Bertrand E, Tomasetto C, Gillet R.
J Cell Sci. 2014 Nov

Bacterial trans-Translation: From Functions to Applications.
Giudice E, Gillet R.
In: "RNA Regulation, Current Topics from the Encyclopedia of Molecular Cell Biology and Molecular Medicine", (ed Robert A. Meyers). Wiley-VCH Verlag, Weinheim, Germany. 2014 Apr. > pp 1-33.

Becker muscular dystrophy severity is linked to the structure of dystrophin.
Nicolas A, Raguénès-Nicol C, Ben Yaou R, Ameziane-Le Hir S, Chéron A, Vié V, Claustres M, Leturcq F, Delalande O, Hubert JF, Tuffery-Giraud S, Giudice E, Le Rumeur E ; the French Network of Clinical Reference Centres for Neuromuscular Diseases (CORNEMUS).
Hum Mol Genet. 2014 Oct / 2015 Mar.

Trans-translation exposed: understanding the structures and functions of tmRNA-SmpB.
Giudice E, Macé K, Gillet R.
Front Microbiol. 2014 Mar

Structure of glycoproteins from Acacia gum: an assembly of ring-like glycoproteins modules.
Renard D, Lepvrier E, Garnier C, Roblin P, Nigen M, Sanchez C.
Carbohydr Polym. 2014 Jan.

Visualizing compaction of polysomes in bacteria.
Cougot N, Molza AE, Delesques J, Giudice E, Cavalier A, Rolland JP, Ermel G, Blanco C, Thomas D, Gillet R.
J Mol Biol. 2014 Jan

> 2013

MetAmyl: a METa-predictor for AMYLoid proteins.
Emily M, Talvas A, Delamarche C. 
PLoS One. 2013 Nov.

Molecular clues to the dystrophin-nNOS interaction: a theoretical approach.
Giudice E, Molza AE, Laurin Y, Nicolas A, Le Rumeur E, Delalande O.
Biochemistry. 2013 Nov

The task force that rescues stalled ribosomes in bacteria. 
Giudice E, Gillet R.
Trends Biochem Sci. 2013 Aug.
>> Journal cover

Structural organization of the polysomes adjacent to mammalian processing bodies (P-bodies). 
Cougot N, Molza AE, Giudice E, Cavalier A, Thomas D, Gillet R.
RNA Biol. 2013 Feb
>> Journal cover

An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus.  
Gavazzi C, Isel C, Fournier E, Moules V, Cavalier A, Thomas D, Lina B, Marquet R.
Nucleic Acid Res. 2013 Jan.

Analyse in situ d’interactions macromoléculaires par Tomographie Electronique : l’exemple des « Processing Bodies ».
Cougot N, Giudice E, Gillet R, Thomas D.
Revue française d'Histotechnologie, Vol 26. Nancy, 2013.

> 2012

Interaction network linking the human H3N2 influenza A virus genomic RNA segments.
Fournier E, Moules V, Essere B, Paillart JC, Sirbat JD, Cavalier A, Rolland JP, Thomas D, Lina B, Isel C, Marquet R.
Vaccine. 2012 Dec

Origine, évolution et métamorphose du ribosome. À la recherche des vestiges d’un ancien "Monde ARN".
Gillet R.
In: "Variations, évolutions, métamorphoses", (eds: B. Pouderon &  J. Casas). Presses Universitaires de Saint-Etienne. 2012 Oct. > pp 233-246

Structure of arabinogalactan-protein from Acacia gum: from porous ellipsoids to supramolecular architectures.
Renard D, Garnier C, Lapp A, Schmitt C, Sanchez C.
Carbohydr Polym. 2012 Sep.

The dual organization of P-bodies revealed by immunoelectron microscopy and electron tomography. 
Cougot N, Cavalier A, Thomas D, Gillet R.
J Mol Biol. 2012 Jun.
>> Journal cover

A Supramolecular Assembly Formed by Influenza A Virus Genomic RNA Segments.  
Fournier E, Moules V, Essere B, Paillart JC, Sirbat JD, Isel C, Cavalier A, Rolland JP, Thomas D, Lina B, Marquet R.
Nucleic Acids Res. 2012 Mar.

Decoding in the absence of a codon by tmRNA and SmpB in the ribosome. 
Neubauer C, Gillet R, Kelley AC, Ramakrishnan V.
Science. 2012 Mar.
>> This paper was highlighted in Nature Reviews Molecular Cell Biology 13, 280 (May 2012) and also featured in Faculty of 1000 Biology

> 2011

SmpB as the handyman of tmRNA during trans-translation.
Felden B, Gillet R.
RNA Biol. 2011 May-Jun

Control of peptide nanotube diameter by chemical modifications of an aromatic residue involved in a single close contact.
Tarabout C, Roux S, Gobeaux F, Fay N, Pouget E, Meriadec C, Ligeti M, Thomas D, IJsselstijn M, Besselievre F, Buisson DA, Verbavatz JM, Petitjean M, Valéry C, Perrin L, Rousseau B, Franck Artzner F, Paternostre M, Cintrat JC.
Proc Natl Acad Sci U S A. 2011 May.

Importance of viral genomic composition in modulating glycoprotein content on the surface of influenza virus particles.
Moulès V, Terrier O, Yver M, Riteau B, Moriscot C, Ferraris O, Julien T, Giudice E, Roland JP, Erny A, Bouscambert-Duchamp M, Frobert E, Rosa-Calatrava M, Yi Pu L, Hay A, Thomas D, Schoehn G, Lina B. 
Virology. 2011 May.

Computational study of the human dystrophin repeats: interaction properties and molecular dynamics.
Legrand B, Giudice E, Nicolas A, Delalande O, Le Rumeur E.
PLoS One. 2011

> 2010

tmRNA-SmpB: a journey to the centre of the bacterial ribosome.
Weis F, Bron P, Giudice E, Rolland JP, Thomas D, Felden B, Gillet R.
EMBO J. 2010 Nov.
>> This paper was highlighted in EMBO J (2010 Nov. 17;29(22):3747-9) and also featured in Faculty of 1000 Biology

In vitro characterization of naturally occurring influenza H3NA- viruses lacking the NA gene segment: toward a new mechanism of viral resistance?
Moules V, Ferraris O, Terrier O, Giudice E, Yver M, Rolland JP, Bouscambert Duchamp M, Bergeron C, Ottmann M, Fournier E, Traversier A, Boule C, Rivoire A, Yipu L, Hay A, Valette M, Marquet R, Rosa-Calatrava M, Naffakh N, Schoehn G, Thomas D, Lina B. 
Virology. 2010 Sep

The molecular chaperone Hsp90's oligomers: when the bird makes its nest.
Moullintraffort L, Bruneaux M, Allegro D, Nazabal A, P. Barbier, Thomas D, Garnier C.
35th FEBS Congress "Molecules of Life, Gothenburg, Switzerland. 2010, Jun.

Biochemical and biophysical characterization of the Mg2+-induced 90-kDa heat shock protein oligomers.
Moullintraffort L, Bruneaux M, Nazabal A, Allegro D, Giudice E, Zal F, Peyrot V, Barbier P, Thomas D, Garnier  C. 
J Biol Chem. 2010 May

The VLITL aggregation-prone motif might trigger amyloid fibril formation of fibrinogen A alpha-chain frameshift variants in vivo. 
Valleix S, Derreumaux P, Garnier C, Briki F, Boimard M, Doucet J, Rioux-Leclercq N, Martin L, Grateau G, Delpech M, Le Pogamp P.
XII International Symposium on Amyloidosis, "From Molecular Mechanisms Toward the Cure of Systemic Amyloidoses", Rome. 2010 Apr 18-21

The 90-kDa heat shock protein HSP90 protects tubulin against thermal denaturation. 
Weis F, Moullintraffort L, Heichette C, Chrétien D, Garnier C.
J Biol Chem. 2010 Mar.

Elucidation of the self-assembly pathway of Lanreotide octapeptide into beta-sheet nanotubes: role of two stable intermediates.
Pouget E, Fay N, Dujardin E, Jamin N, Perrin L, Pandit A, Rose T, Valéry C, Thomas D, Paternostre M, Artzner F. 
J Am Chem Soc. 2010 Mar.

Accommodation of tmRNA-SmpB into stalled ribosomes: A cryo-EM study.
Weis F, Bron P, Rolland JP, Thomas D, Felden B, Gillet R. 
RNA. 2010 Feb

Observation of membrane proteins in situ: AQPcic, the insect aquaporin example.
Thomas D, Cavalier A. 
In: "Membrane protein structure determination", (ed J.-J. Lacapere), in Series “Springer Protocols. Methods in Molecular Biology” (J. Walker, ser. ed.) Vol. 654. Humana Press, Springer, Heidelberg, 2010. > pp 654:171-85.

Articles publiés dans les comptes-rendus de congrès internationaux de bio-informatique

Comparison and Fusion Model in Protein Motifs.
Altamiranda J, Aguilar J, Delamarche C. 
Proceedings of the 2013 39th Latin American Computing Conference (CLEI), IEEE Xplore, Naiguata. 2013, Oct 7-11. > 2, 229-240

Algorithm based on the ant colony optimization for DNA motif fusion.
Altamiranda J, Aguilar J, Torres R, Delamarche C. 
Mathematical Models and Methods in Modern Science, Porto. 2012. > 3, pp 177-182.

Similarity of Amyloid Protein Motif using an Hybrid Intelligent System.
[Similitud de Motivos de Proteínas Amiloideas utilizando un Sistema Hibrido Inteligente]
[Comparacion y fusion de Motivos de Proteina β-amiloidea utilizando Computacion Inteligente]

Altamiranda J, Aguilar J, Delamarche C.
Latin America Transactions [Revista IEEE America Latina] IEEE Xplore. 2011, Sept 29. > pp 700-710.

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